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Run Pedixplorer Shiny application

Source: R/app.R
ped_shiny.Rd

This function creates a shiny application to manage and visualize pedigree data using the ped_ui() and ped_server() functions.

Usage

ped_shiny(
  port = getOption("shiny.port"),
  host = getOption("shiny.host", "127.0.0.1"),
  precision = 6,
  ind_max_warning = 300,
  ind_max_error = 500
)

Arguments

port

(optional) Specify port the application should list to.

host

(optional) The IPv4 address that the application should listen on.

precision

Number of decimal for the position of the boxes in the plot.

ind_max_warning

An integer to define the maximum number of individuals to plot before throwing a warning. If the number of individuals is greater than this value, the user will be asked to confirm the plot.

ind_max_error

An integer to define the maximum number of individuals to plot before throwing an error. If the number of individuals is greater than this value, an error will be thrown and the plot will not be computed.

Value

Running Shiny Application

Details

The application is composed of several modules:

  • Data import

  • Data column selection

  • Data download

  • Family selection

  • Health selection

  • Informative selection

  • Subfamily selection

  • Plotting pedigree

  • Family information

Examples

if (interactive()) {
    ped_shiny()
}